From the looks of it you system has too many processes running, leaving little room to operate in memory.
Maybe you should stop some processes to see if transmission runs better.
ofcourse you could give rtorrent a try, but transmission should run normally as well (it does for me).
Here is my output of 'free':
Code:total used free shared buffers Mem: 30164 29348 816 0 1120 Swap: 68672 6416 162256 Total: 98836 35764 163072
Not sure why you have this '-/+ buffers/cache'. Could this be overloading your system???
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